| Standings | P | W | D | L | GD | PTS | |
|---|---|---|---|---|---|---|---|
| 1 | Omiya Ardija | 38 | 25 | 10 | 3 | 40 | 85 |
| 2 | Imabari | 38 | 22 | 7 | 9 | 24 | 73 |
| 3 | Kataller Toyama | 38 | 16 | 16 | 6 | 18 | 64 |
| 4 | Matsumoto Yamaga | 38 | 16 | 12 | 10 | 16 | 60 |
| 5 | Fukushima United | 38 | 18 | 5 | 15 | 15 | 59 |
| 6 | FC Osaka | 38 | 15 | 13 | 10 | 12 | 58 |
| 7 | Giravanz Kitakyushu | 38 | 15 | 11 | 12 | 2 | 56 |
| 8 | FC Gifu | 38 | 15 | 8 | 15 | 8 | 53 |
| 9 | Sagamihara SC | 38 | 14 | 11 | 13 | 0 | 53 |
| 10 | Azul Claro Numazu | 38 | 15 | 7 | 16 | 7 | 52 |
| 11 | Vanraure Hachinohe | 38 | 13 | 13 | 12 | 2 | 52 |
| 12 | Zweigen Kanazawa | 38 | 13 | 11 | 14 | -2 | 50 |
| 13 | Gainare Tottori | 38 | 14 | 8 | 16 | -16 | 50 |
| 14 | FC Ryukyu | 38 | 12 | 11 | 15 | -9 | 47 |
| 15 | Tegevajaro Miyazaki FC | 38 | 12 | 10 | 16 | -4 | 46 |
| 16 | Kamatamare Sanuki | 38 | 10 | 13 | 15 | -4 | 43 |
| 17 | Nara Club | 38 | 7 | 18 | 13 | -13 | 39 |
| 18 | Parceiro Nagano | 38 | 7 | 16 | 15 | -13 | 37 |
| 19 | YSCC | 38 | 7 | 11 | 20 | -30 | 32 |
| 20 | Grulla Morioka | 38 | 5 | 7 | 26 | -53 | 22 |